Online email separator generator#
Online email separator manual#
Online email separator full#
Online email separator code#

Will explode a sequence set into tabular format. Will format your fasta sequences and create a correct input file for PAML (it's a phylip format with some modifications). Will take a newick tree and create three versions: the original, branch lengths only and topology only (for ASR in paml).Д¬reate formatted sequence file for PAML analysis (fasta2paml) Will collapse a set of sequences into haplotypes and output som simple statistics and formatted input files for ArlequinДata conversion Strip branch lengths and bootstrap values from newick trees (newick parser)

Online email separator full#

It simply removes the boundary areas that are full of gaps.Д®xtracts all the variable sites from an alignment Trims an alignment to the shortest sequence. It will join alignment 1,sequence 1 with alignment 2, sequence 1 and so on.

Simple and fast way of joining two alignments, sequence by sequence. It will split into sets WITH and WITHOUT the given header keyword (like 'females/males', 'population1/population2') Simple and fast way of dividing your dataset into two sets by a header Simple and fast way of joining a set of fasta sequences into one sequence Simple and fast way of removing some sequences from a large sequence set, based on a list of headers or fuzzy matching. Simple and fast way of extracting some sequences from a large sequence set, based on a list of headers or fuzzy matching. Working with fasta datasets/alignments Fasta sequence extractor Here you can replace headers back and forth by submitting old and new headers - which you'll typically keep in a excel spreadsheet. Some programs do not like the fancy headers in fasta files and you have to live with short, unique names - that are really non-descriptive. Simple and fast way of extracting headers, edit them and reapplying them without worrying about the sequence itself. Simple and fast way of extraction the headers from fasta files - and optionally split each header into fields based on a chosen character/word. Working with fasta headers Fasta header extractor (and header splitter) Sequence 2 fasta converters (external tools) HCV Sequence Conversion Interface FaBox is online again, but all log data disappeared Reinstalled local phpserver, we're back. fasta2migrate added, only produces an infile. Added file upload to some services, rest will follow.

Online email separator manual#

log data was restored by manual copying of the server files DNAcollapser moved and integrated with common FaBox layout Fasta sequence extractor service added by request No updates in a while due to teaching and arrival of new baby Added email notification of shouts (so I'll answer them!) Comment lines are now allowed in input data FaBox has been updated, shoutbox removed FaBox has been accepted for publication in Molecular Ecology Notes FaBox paper is online, reference added to faq

Online email separator code#

Updated to 1.1, mostly invisible code changes Alignment cropper updated (fasta output added) Alignment: show variable sites only added Show variable sites updated to 0- or 1-based sequence position numbering DNA collapser updated, now ignores case differences (ACG = acg) Faq updated: memory problems and downloading FaBox

FaBox is available for direct download (see Faq)

Online email separator generator#

Small bug in random sequence generator fixed Moved to new server - a few code changes to still work. I hate my users - now I was forced to code php again. Version 1.5 - Haplotypecollapser working again. Please stop using fabox - it is outdated! Welcome to FaBox (1.6) - an online fasta sequence toolbox